About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09908ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5
Paelopatides09909LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
Paelopatides09910-
Paelopatides09912PROTEIN CBG26694
Paelopatides09913PROTEIN CBG26694
Paelopatides09914TRANSGELIN
Paelopatides09915DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides09916REVERSE TRANSCRIPTASE
Paelopatides09917CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides09918-
Paelopatides09919PROTEIN CBG26694
Paelopatides09920SLR5058 PROTEIN
Paelopatides09921NETRIN RECEPTOR UNC5
Paelopatides09922FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides09923-
Paelopatides09925TOL-PAL SYSTEM PROTEIN TOLB
Paelopatides09926MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40
Paelopatides09927MUCIN 4-RELATED
Paelopatides09928MUCIN 4-RELATED
Paelopatides09930CONTACTIN 5
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