About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09979BUCENTAUR RELATED
Paelopatides09980IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides09982ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides09983PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09984TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides09985RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides09986-
Paelopatides09987REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09988-
Paelopatides09989PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09990TYROSINE-PROTEIN KINASE
Paelopatides09991PROTEIN CBG26694
Paelopatides09992-
Paelopatides09993PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09994RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides09995-
Paelopatides09996RETROTRANSPOSON
Paelopatides09997RWD DOMAIN-CONTAINING PROTEIN 3
Paelopatides09998-
Paelopatides09999EXPRESSED PROTEIN
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