About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10042SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10043ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10044-
Paelopatides10045TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides10046CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10047-
Paelopatides10050METHYLTRANSFERASE
Paelopatides10051-
Paelopatides10052-
Paelopatides10053EPM2A-INTERACTING PROTEIN 1
Paelopatides10054F-BOX ONLY PROTEIN 15
Paelopatides10055ANKYRIN REPEAT CONTAINING
Paelopatides10056FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides10057KYNURENINASE
Paelopatides10058-
Paelopatides10059CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides10060TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides10061BUCENTAUR RELATED
Paelopatides10062TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides10063SI:CH211-108C17.2-RELATED-RELATED
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