Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s082.g0054.t1 | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. |
| Lsat_s082.g0055.t1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s082.g0056.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s082.g0057.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s082.g0058.t1 | |
| Lsat_s082.g0059.t1 | C5ORF31 |
| Lsat_s082.g0060.t1 | |
| Lsat_s082.g0061.t1 | |
| Lsat_s082.g0062.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s082.g0063.t1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| Lsat_s082.g0064.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s082.g0065.t1 | |
| Lsat_s082.g0066.t1 | ATP-DEPENDENT RNA HELICASE |
| Lsat_s082.g0067.t1 | |
| Lsat_s082.g0068.t1 | UNCHARACTERIZED |
| Lsat_s082.g0069.t1 | MONOCARBOXYLATE TRANSPORTER |
| Lsat_s082.g0070.t1 | RING FINGER PROTEIN 17 |
| Lsat_s082.g0071.t1 | INTERFERON-INDUCIBLE GTPASE |
| Lsat_s082.g0072.t1 | AROMATIC AMINO ACID HYDROXYLASE |
| Lsat_s082.g0073.t1 | UNCHARACTERIZED |
| Lsat_s082.g0074.t1 | PROTEIN CBG03580 |
| Lsat_s082.g0075.t1 | REGULATOR-RELATED |
| Lsat_s082.g0076.t1 | |
| Lsat_s082.g0077.t1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| Lsat_s082.g0078.t1 | UBIQUITINATION FACTOR E4 |
| Lsat_s082.g0079.t1 | BITESIZE, ISOFORM I |
| Lsat_s082.g0080.t1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Lsat_s082.g0081.t1 | |
| Lsat_s082.g0082.t1 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
| Lsat_s082.g0083.t1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Lsat_s082.g0084.t1 | UNCHARACTERIZED |
| Lsat_s082.g0085.t1 | NADPH OXIDASE |
| Lsat_s082.g0086.t1 | |
| Lsat_s082.g0087.t1 | WD REPEAT AND COILED-COIL-CONTAINING PROTEIN |
| Lsat_s082.g0088.t1 | ASHWIN |
| Lsat_s082.g0089.t1 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
| Lsat_s082.g0090.t1 | SPONDIN |
| Lsat_s082.g0091.t1 | |
| Lsat_s082.g0092.t1 | UNCHARACTERIZED |
| Lsat_s082.g0093.t1 | TETRASPANIN |
| Lsat_s082.g0094.t1 | |
| Lsat_s082.g0095.t1 | TETRASPANIN |
| Lsat_s082.g0096.t1 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
| Lsat_s082.g0097.t1 | |
| Lsat_s082.g0098.t1 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
| Lsat_s083.g0001.t1 | TRYPSIN-RELATED |
| Lsat_s083.g0002.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
| Lsat_s083.g0003.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
| Lsat_s083.g0004.t1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Lsat_s083.g0005.t1 | STEREOCILIN RELATED |
