Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s083.g0006.t1 | CYTOCHROME C OXIDASE SUBUNIT 6B |
Lsat_s083.g0007.t1 | UNCHARACTERIZED |
Lsat_s083.g0008.t1 | DENTIN SIALOPHOSPHOPROTEIN |
Lsat_s083.g0009.t1 | BRORIN FAMILY MEMBER |
Lsat_s083.g0010.t1 | ALR/ERV |
Lsat_s083.g0011.t1 | |
Lsat_s083.g0012.t1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
Lsat_s083.g0013.t1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
Lsat_s083.g0014.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Lsat_s083.g0015.t1 | CHROMOSOME 16 OPEN READING FRAME 96 |
Lsat_s083.g0016.t1 | |
Lsat_s083.g0017.t1 | UNCHARACTERIZED |
Lsat_s083.g0018.t1 | |
Lsat_s083.g0019.t1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
Lsat_s083.g0020.t1 | SULFATE TRANSPORTER |
Lsat_s083.g0021.t1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 16 |
Lsat_s083.g0022.t1 | SULFATE TRANSPORTER |
Lsat_s083.g0023.t1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
Lsat_s083.g0024.t1 | NY-REN-58 ANTIGEN |
Lsat_s083.g0025.t1 | FORMIN-LIKE PROTEIN |
Lsat_s083.g0026.t1 | |
Lsat_s083.g0027.t1 | CHITINASE |
Lsat_s083.g0028.t1 | |
Lsat_s083.g0029.t1 | CHITINASE |
Lsat_s083.g0030.t1 | |
Lsat_s083.g0031.t1 | |
Lsat_s083.g0032.t1 | CHITINASE |
Lsat_s083.g0033.t1 | CHITINASE |
Lsat_s083.g0034.t1 | |
Lsat_s083.g0035.t1 | |
Lsat_s083.g0036.t1 | CHITINASE |
Lsat_s083.g0037.t1 | UNCHARACTERIZED |
Lsat_s083.g0038.t1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
Lsat_s083.g0039.t1 | VILLIN |
Lsat_s083.g0040.t1 | |
Lsat_s083.g0041.t1 | |
Lsat_s083.g0042.t1 | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 |
Lsat_s083.g0043.t1 | |
Lsat_s083.g0044.t1 | SPERMATHECAL PHYSIOLOGY VARIANT |
Lsat_s083.g0045.t1 | - |
Lsat_s083.g0046.t1 | DYNEIN LIGHT CHAIN |
Lsat_s083.g0047.t1 | RIBONUCLEASE P PROTEIN SUBUNIT P14 |
Lsat_s083.g0048.t1 | PORCUPINE |
Lsat_s083.g0049.t1 | |
Lsat_s083.g0050.t1 | SNF2/RAD54 FAMILY MEMBER |
Lsat_s083.g0051.t1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Lsat_s083.g0052.t1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
Lsat_s083.g0053.t1 | INDOLEAMINE 2,3-DIOXYGENASE |
Lsat_s083.g0054.t1 | |
Lsat_s083.g0055.t1 | UNCHARACTERIZED |