About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10336RE38146P
Paelopatides10337-
Paelopatides10338-
Paelopatides10339POL PROTEIN
Paelopatides10340-
Paelopatides10341REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10342PUTATIVE-RELATED
Paelopatides10343-
Paelopatides10344-
Paelopatides10345FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides10346NETRIN RECEPTOR UNC5
Paelopatides10347SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides10348-
Paelopatides10349SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides10350-
Paelopatides10351FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides10352GAG-RELATED PROTEIN
Paelopatides10353NETRIN/LAMININ-RELATED
Paelopatides10354SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides10355PROTEIN CBG26694
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