About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10356-
Paelopatides10357REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10358THIAMIN PYROPHOSPHOKINASE
Paelopatides10359ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides10360BONUS, ISOFORM C-RELATED
Paelopatides10361ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10362CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Paelopatides10363SEPIAPTERIN REDUCTASE
Paelopatides10365-
Paelopatides10366NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides10367-
Paelopatides10368ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10369SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Paelopatides10370DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1
Paelopatides10371PROTEIN DISPATCHED-RELATED
Paelopatides10373HAUS AUGMIN-LIKE COMPLEX SUBUNIT 5
Paelopatides10374DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides10375REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10377REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10379-
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