About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10562FOLLISTATIN-RELATED
Paelopatides10563D-GLUCURONYL C5-EPIMERASE
Paelopatides10564-
Paelopatides10565REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10566GAG-RELATED PROTEIN
Paelopatides10567TRANSLATION ELONGATION FACTOR-RELATED
Paelopatides10568ANTIBIOTIC RESISTANCE PROTEIN MCBG
Paelopatides10569GLUCOSYLCERAMIDASE
Paelopatides10570CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A CAF-1 SUBUNIT A
Paelopatides10571TROPOMYOSIN
Paelopatides10572ZINC FINGER RNA-BINDING PROTEIN
Paelopatides10573ZINC FINGER RNA-BINDING PROTEIN
Paelopatides10574MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides10575NEPHRIN
Paelopatides10576-
Paelopatides10577PROTEIN CBG26694
Paelopatides10578-
Paelopatides10579LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides10580-
Paelopatides10581EPM2A-INTERACTING PROTEIN 1
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