About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10582EPM2A-INTERACTING PROTEIN 1
Paelopatides10583RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1
Paelopatides10584FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10585PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides10586FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides10587-
Paelopatides10588TOL-PAL SYSTEM PROTEIN TOLB
Paelopatides10589-
Paelopatides10590SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides10593SEC63 DOMAIN-CONTAINING
Paelopatides10594RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides10595RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides10596-
Paelopatides10597DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Paelopatides10598PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides10599GAG-RELATED PROTEIN
Paelopatides10601ENZYMATIC POLYPROTEIN-RELATED
Paelopatides10602-
Paelopatides10603REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10604GALACTOSE-3-O-SULFOTRANSFERASE
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