About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10481ASPARTYL/LYSYL-TRNA SYNTHETASE
Paelopatides10482ASPARTYL/LYSYL-TRNA SYNTHETASE
Paelopatides10483-
Paelopatides10484ATP-DEPENDENT DNA HELICASE
Paelopatides10485-
Paelopatides10486REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10487L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides10488ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides10489POL PROTEIN
Paelopatides10490FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides10491PROTEIN CBG26694
Paelopatides10492PROTEIN CBG26694
Paelopatides10493PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides10494PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides10495-
Paelopatides10496B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides10497REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10498AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A
Paelopatides10499ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL
Paelopatides10500ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
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