About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10521F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10522CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10523-
Paelopatides10524ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides10526RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides10527RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides10528ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10529REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10530ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10531P2X PURINOCEPTOR
Paelopatides10532ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10533FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides10534T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides10535POL PROTEIN
Paelopatides10536PROTEIN CBG26694
Paelopatides10537-
Paelopatides10538TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides10539PROTEIN CBG26694
Paelopatides10540OS09G0542200 PROTEIN
Paelopatides10541PHOSPHOLIPID SCRAMBLASE-RELATED
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