About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10501PROTEIN CBG26694
Paelopatides10502SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10503-
Paelopatides10504PROTEIN CBG26694
Paelopatides10505S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10506TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides10507-
Paelopatides10508UNCHARACTERIZED
Paelopatides10509RETROTRANSPOSON
Paelopatides10510RETROTRANSPOSON
Paelopatides10511S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10512-
Paelopatides10513CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10514S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10515S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10516S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10517S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides10518-
Paelopatides10519TRANSPOSON
Paelopatides10520EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E
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