About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11040TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides11041SLEI FAMILY PROTEIN
Paelopatides11042-
Paelopatides11043ENDONUCLEASE
Paelopatides11044E3 SUMO-PROTEIN LIGASE CBX4
Paelopatides11045REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11046-
Paelopatides11047SI:CH211-108C17.2-RELATED-RELATED
Paelopatides11048BAX INHIBITOR-RELATED
Paelopatides11049-
Paelopatides11050ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11051-
Paelopatides11052TRNA METHYLTRANSFERASE
Paelopatides11053B-CELL RECEPTOR CD22
Paelopatides11054-
Paelopatides11055SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides11056INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Paelopatides11057ENZYMATIC POLYPROTEIN-RELATED
Paelopatides11058-
Paelopatides11059FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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