About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12506REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12507TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
Paelopatides12508TATD FAMILY DEOXYRIBONUCLEASE
Paelopatides12509BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Paelopatides12510-
Paelopatides12511-
Paelopatides12512FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12513ENDONUCLEASE-RELATED
Paelopatides12514-
Paelopatides12515-
Paelopatides12516PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides12517PROTEIN CBG26694
Paelopatides12518-
Paelopatides12519XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides12520PROTEIN CBG26694
Paelopatides12521PROTEIN CBG26694
Paelopatides12522-
Paelopatides12523RETINOL DEHYDROGENASE-RELATED
Paelopatides12524ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12525ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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