About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12486NETRIN RECEPTOR UNC5
Paelopatides12487PROTEIN CBG26694
Paelopatides12488-
Paelopatides12489-
Paelopatides12490CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12491EXODEOXYRIBONUCLEASE III
Paelopatides12492-
Paelopatides12493BARRIER TO AUTOINTEGRATION FACTOR 2
Paelopatides12494REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12495EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
Paelopatides12496-
Paelopatides12497EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
Paelopatides12498POL PROTEIN
Paelopatides12499PARANEOPLASTIC ANTIGEN
Paelopatides12500DNA HELICASE RECQ FAMILY MEMBER
Paelopatides12501TWO PORE CHANNEL 3
Paelopatides1250252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides12503ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12504-
Paelopatides12505-
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