About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13735N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
Paelopatides13736-
Paelopatides13737SHORT STATURE HOMEOBOX
Paelopatides13738TRANSMEMBRANE PROTEIN 256
Paelopatides13739ATP-DEPENDENT RNA HELICASE
Paelopatides13740ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1
Paelopatides13741-
Paelopatides13742-
Paelopatides13743PROTEIN CBG26694
Paelopatides13744PROTEIN CBG26694
Paelopatides13745-
Paelopatides13746-
Paelopatides13747PROTEIN CBG26694
Paelopatides13748PROTEIN CBG26694
Paelopatides13749REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13750-
Paelopatides13751CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Paelopatides13752XANTHINE DEHYDROGENASE
Paelopatides13753-
Paelopatides13754-
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