About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14120CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14121ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14122REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14123RETROTRANSPOSON
Paelopatides14124UNCHARACTERIZED
Paelopatides14125-
Paelopatides14126SI:CH211-108C17.2-RELATED-RELATED
Paelopatides14127-
Paelopatides14128IODOTHYRONINE DEIODINASE
Paelopatides14129CULLIN
Paelopatides14130CTP SYNTHASE
Paelopatides14131-
Paelopatides14132UDP- GLUCOSE PYROPHOSPHORYLASE
Paelopatides14133-
Paelopatides14134-
Paelopatides14135HYR DOMAIN-CONTAINING PROTEIN
Paelopatides14136AP ENDONUCLEASE
Paelopatides14137PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides14138EPM2A-INTERACTING PROTEIN 1
Paelopatides14139NUCLEOSIDE DIPHOSPHATE KINASE 6
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