About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14161TUBULIN
Paelopatides14162TUBULIN
Paelopatides14164BONUS, ISOFORM C-RELATED
Paelopatides14165REVERSE TRANSCRIPTASES
Paelopatides14166SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT
Paelopatides14167ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14168-
Paelopatides14169FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14170-
Paelopatides14171CYTOCHROME P450 508A4-RELATED
Paelopatides14172EXS-RELATED PROTEIN
Paelopatides14173-
Paelopatides14174AKT1 SUBSTRATE 1 PROTEIN
Paelopatides14175PROTEIN CBG26694
Paelopatides14176RETROTRANSPOSON
Paelopatides14177RETROTRANSPOSON
Paelopatides14178-
Paelopatides14184-
Paelopatides14185FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14186OS05G0310600 PROTEIN
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