About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14187RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides14188ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
Paelopatides14189ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
Paelopatides14190-
Paelopatides14191NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides14192-
Paelopatides14193-
Paelopatides14194EPOXIDE HYDROLASE 1-RELATED
Paelopatides14195BONUS, ISOFORM C-RELATED
Paelopatides14196-
Paelopatides14197SETA BINDING PROTEIN 1
Paelopatides14198FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14199FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14200-
Paelopatides14201PROTEIN CBG26694
Paelopatides14202ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides14203UNCHARACTERIZED
Paelopatides14204-
Paelopatides14205ALANYL-TRNA SYNTHETASE
Paelopatides14206ALANYL-TRNA SYNTHETASE
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