About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14674F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14675GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN
Paelopatides14676HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides14677MALEYLACETOACETATE ISOMERASE
Paelopatides14678OS09G0542200 PROTEIN
Paelopatides14679L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides14680-
Paelopatides14681-
Paelopatides14684NUCLEAR FUSION PROTEIN FUS2
Paelopatides14685-
Paelopatides14686-
Paelopatides14687-
Paelopatides14688ENDONUCLEASE-RELATED
Paelopatides14689TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides14690REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14691CYCLINS
Paelopatides14693UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides14694SI:CH211-196P9.1-RELATED
Paelopatides14696REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14697REVERSE TRANSCRIPTASES
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