About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14653ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides14654-
Paelopatides14655-
Paelopatides14656REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14657FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides14658-
Paelopatides14659REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14660-
Paelopatides14661ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides14662MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides14663UBIQUITIN
Paelopatides14664REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14665EXPRESSED PROTEIN
Paelopatides14666-
Paelopatides14667BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides14668BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides14670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14671ENZYMATIC POLYPROTEIN-RELATED
Paelopatides14672DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides14673TYROSINE-PROTEIN KINASE
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