About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14609REVERSE TRANSCRIPTASES
Paelopatides14610-
Paelopatides14611DNA HELICASE RECQ FAMILY MEMBER
Paelopatides14612CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Paelopatides14613CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Paelopatides14614ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14615-
Paelopatides14616-
Paelopatides14617-
Paelopatides14618NUCLEAR HORMONE RECEPTOR
Paelopatides14619ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14621TRANSPOSABLE ELEMENT-RELATED
Paelopatides14622-
Paelopatides14623FI04643P-RELATED
Paelopatides14624TUBULIN
Paelopatides14625-
Paelopatides14626VIRAL IAP-ASSOCIATED FACTOR HOMOLOG
Paelopatides14627GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides14628GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides14629FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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