About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14630FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14631REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14632-
Paelopatides14633GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides14634NETRIN RECEPTOR UNC5
Paelopatides14635NETRIN RECEPTOR UNC5
Paelopatides14636-
Paelopatides14638LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides146392-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2
Paelopatides14640COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Paelopatides14641COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Paelopatides14642-
Paelopatides14643-
Paelopatides14644-
Paelopatides14645-
Paelopatides14646BUCENTAUR RELATED
Paelopatides14647REVERSE TRANSCRIPTASES
Paelopatides14648PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides14649TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides14650REVERSE TRANSCRIPTASE
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