About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15747ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15748POL PROTEIN
Paelopatides15749ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15750ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15751SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN
Paelopatides15752DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
Paelopatides15753FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides15754-
Paelopatides15755MATING RESPONSE PROTEIN POI2
Paelopatides15756NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
Paelopatides15757NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
Paelopatides15758-
Paelopatides15759ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15760PROTEIN CBG26694
Paelopatides15761ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15762PROTEIN CBG26694
Paelopatides15763MULTIPLE PDZ DOMAIN PROTEIN
Paelopatides15764REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15765MULTIPLE PDZ DOMAIN PROTEIN
Paelopatides15766LD33804P
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