About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15727-
Paelopatides15728TRANSPOSASE, PUTATIVE-RELATED
Paelopatides15729-
Paelopatides15730EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Paelopatides15731PROTEIN CBG26694
Paelopatides15732HIGH-AFFINITY CHOLINE TRANSPORTER 1
Paelopatides15733-
Paelopatides15734CHARGED MULTIVESICULAR BODY PROTEIN
Paelopatides15735PROTEIN CBG26694
Paelopatides15736PROTEIN CBG26694
Paelopatides15737TRANSLATION INITIATION FACTOR IF-2-RELATED
Paelopatides15738PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides15739STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Paelopatides15740GAG-RELATED PROTEIN
Paelopatides15741GAG-RELATED PROTEIN
Paelopatides15742ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides15743PYRIDOXINE-5-PHOSPHATE OXIDASE
Paelopatides15744HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Paelopatides15745SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN
Paelopatides15746PROTEIN CBG26694
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