About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15767-
Paelopatides15768SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides15769SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides15770ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides15771B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides15772SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides15773SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides15774-
Paelopatides15775EPM2A-INTERACTING PROTEIN 1
Paelopatides15776THREONINE SYNTHASE FAMILY MEMBER
Paelopatides15777PEPTIDASE
Paelopatides15778DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides15779PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides15780PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides15781PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides15782PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides15783-
Paelopatides15784PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides15785TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides15786ENZYMATIC POLYPROTEIN-RELATED
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