About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16041REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16042COLD SHOCK DOMAIN CONTAINING PROTEINS
Paelopatides16043PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides16044PROTEIN CBG26694
Paelopatides16045ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16046FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16047EPM2A-INTERACTING PROTEIN 1
Paelopatides16048ACROSIN-RELATED
Paelopatides16049-
Paelopatides16050ENDONUCLEASE
Paelopatides16052PROTEIN CBG26694
Paelopatides16053TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides16054TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides16055-
Paelopatides16056ENOS INTERACTING PROTEIN
Paelopatides16057REPETIN
Paelopatides16058MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28
Paelopatides16059UNCHARACTERIZED
Paelopatides16060FATTY ACID BINDING PROTEIN
Paelopatides16061FATTY ACID BINDING PROTEIN
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