About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16656-
Paelopatides16657PROTEIN CBG26694
Paelopatides16658PROTEIN CBG26694
Paelopatides16659ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16660-
Paelopatides16661NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides16662ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16663REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16664-
Paelopatides16665POL PROTEIN
Paelopatides16666-
Paelopatides16667REVERSE TRANSCRIPTASES
Paelopatides16668-
Paelopatides16669MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
Paelopatides16670ENZYMATIC POLYPROTEIN-RELATED
Paelopatides16671ENDONUCLEASE-RELATED
Paelopatides16672-
Paelopatides16673-
Paelopatides16674PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Paelopatides16675ADHESION G PROTEIN-COUPLED RECEPTOR G7
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