About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16718ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides16719REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16720L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides16721MATING RESPONSE PROTEIN POI2
Paelopatides16722NUCLEAR HORMONE RECEPTOR
Paelopatides16723SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
Paelopatides16724-
Paelopatides16725SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
Paelopatides16726REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16727-
Paelopatides16728-
Paelopatides16729NFRKB-RELATED
Paelopatides16730-
Paelopatides16731ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides16732PROTEIN CBG26694
Paelopatides16733ABC1 FAMILY PROTEIN
Paelopatides16734CYSTEINE DESULFURYLASE FAMILY MEMBER
Paelopatides16735SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides16736-
Paelopatides16737ENDONUCLEASE-RELATED
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