About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16676ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides16677-
Paelopatides16678PARANEOPLASTIC ANTIGEN
Paelopatides16680REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16681-
Paelopatides16682-
Paelopatides16683ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16684ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides16685EPM2A-INTERACTING PROTEIN 1
Paelopatides16686RETROTRANSPOSON
Paelopatides16687-
Paelopatides16688-
Paelopatides16689-
Paelopatides16690GAG-RELATED PROTEIN
Paelopatides16691-
Paelopatides16692-
Paelopatides16693GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
Paelopatides16694CARBOHYDRATE SULFOTRANSFERASE
Paelopatides16695-
Paelopatides16696PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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