About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16797-
Paelopatides16798ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16799DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED
Paelopatides16800CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
Paelopatides16801-
Paelopatides16802-
Paelopatides16803RETROTRANSPOSON
Paelopatides16804RETROTRANSPOSON
Paelopatides16805GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
Paelopatides16806PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides16807-
Paelopatides16809-
Paelopatides16810SYNAPTOTAGMIN
Paelopatides16811METHYLTRANSFERASE LIKE 7B
Paelopatides16812-
Paelopatides16813CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Paelopatides16814SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides16815RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
Paelopatides16816-
Paelopatides16817PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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