About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16969DNA POLYMERASE DELTA SUBUNIT 2
Paelopatides16970FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16971-
Paelopatides16972-
Paelopatides16973L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides16974-
Paelopatides16975-
Paelopatides16976FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16977-
Paelopatides16989ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides16990PROTEIN CBG26694
Paelopatides16991ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides16992ORGANIC SOLUTE TRANSPORTER-RELATED
Paelopatides16993PROTEIN CBG26694
Paelopatides16994ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides16995-
Paelopatides16996PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides16997MITOCHONDRIAL RIBOSOMAL PROTEIN L30
Paelopatides16998-
Paelopatides16999PROTEIN CBG26694
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