About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16925-
Paelopatides16926REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16927-
Paelopatides16928RETINOBLASTOMA-BINDING PROTEIN 5
Paelopatides16929TRANSPOSON
Paelopatides16930FI04643P-RELATED
Paelopatides16931TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides16932RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides16933RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides16936REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16937-
Paelopatides16938SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16939NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Paelopatides16940PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides16941RETROTRANSPOSON
Paelopatides16942RETROTRANSPOSON
Paelopatides16943NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Paelopatides16944-
Paelopatides16945G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
Paelopatides16946G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
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