About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16949ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides16950-
Paelopatides16951-
Paelopatides16952ENDONUCLEASE RELATED
Paelopatides16953ENDONUCLEASE RELATED
Paelopatides16954LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
Paelopatides16955FORMATE DEHYDROGENASE 1
Paelopatides16956-
Paelopatides16957ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides16958-
Paelopatides16959-
Paelopatides16960PROTEIN CBG26694
Paelopatides16961PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3
Paelopatides16962-
Paelopatides16963PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3
Paelopatides16964GLYCOGEN SYNTHASE KINASE-3 ALPHA
Paelopatides16965-
Paelopatides16966-
Paelopatides16967LETHAL 2 GIANT LARVAE PROTEIN
Paelopatides16968DNA POLYMERASE DELTA SUBUNIT 2
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