About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17355G KINASE ANCHORING PROTEIN 1
Paelopatides17356-
Paelopatides17357NADH-UBIQUINONE OXIDOREDUCTASE
Paelopatides17358SIGNAL-TRANSDUCING ADAPTOR PROTEIN-RELATED
Paelopatides17359GPI TRANSAMIDASE COMPONENT PIG-T-RELATED
Paelopatides17360TRANSPOSON
Paelopatides17361-
Paelopatides17362-
Paelopatides17363-
Paelopatides17364SECY/SEC61-ALPHA FAMILY MEMBER
Paelopatides17365MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides17366-
Paelopatides17367GUANYLATE BINDING PROTEIN
Paelopatides17368TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides17370OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides17371-
Paelopatides17372SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17373ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17374ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17375BONUS, ISOFORM C-RELATED
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