About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17376PLEXIN
Paelopatides17377RETROTRANSPOSON
Paelopatides17378REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17379HYDROLASE-RELATED
Paelopatides17380-
Paelopatides17381P25 ALPHA-RELATED
Paelopatides17382-
Paelopatides17383DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides17384-
Paelopatides17385CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17386CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17387THIOREDOXIN
Paelopatides17388PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides17389UNCHARACTERIZED
Paelopatides17390ALPHA-TECTORIN-RELATED
Paelopatides17391ALPHA-TECTORIN-RELATED
Paelopatides17392REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Paelopatides17393-
Paelopatides17394SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED
Paelopatides17395-
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