About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17546IQ DOMAIN-CONTAINING PROTEIN D
Paelopatides17547ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides17548TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
Paelopatides17550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17551WSCD FAMILY MEMBER CG9164
Paelopatides17552REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17553CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Paelopatides17554-
Paelopatides17555-
Paelopatides17556MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides17557ENDONUCLEASE
Paelopatides17558-
Paelopatides17559DNA POLYMERASE
Paelopatides17560RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides17561RAB6-INTERACTING PROTEIN GORAB
Paelopatides17562RAB6-INTERACTING PROTEIN GORAB
Paelopatides17563ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides175645-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides17565MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides17566APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
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