About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17440TRANSPOSON
Paelopatides17441ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
Paelopatides17442-
Paelopatides17443ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17444PROTEIN CBG26694
Paelopatides17445-
Paelopatides17446CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17447ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17448GAG-RELATED PROTEIN
Paelopatides17449-
Paelopatides17450L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides17451FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides17452ENDONUCLEASE-RELATED
Paelopatides17453-
Paelopatides17454-
Paelopatides17455SI:CH211-196P9.1-RELATED
Paelopatides17456UNCHARACTERIZED
Paelopatides17457ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides17458-
Paelopatides17459PROPERDIN
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