About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17526ENDONUCLEASE-RELATED
Paelopatides17527ENZYMATIC POLYPROTEIN-RELATED
Paelopatides17528ODD-SKIPPED - RELATED
Paelopatides17529-
Paelopatides17530-
Paelopatides17531IRE1-RELATED
Paelopatides17532MYB-LIKE PROTEIN V
Paelopatides17533ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17534-
Paelopatides17535CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides17536POL PROTEIN
Paelopatides17537ENDONUCLEASE-RELATED
Paelopatides17538ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17539ACID AMIDASE
Paelopatides17540WD40 REPEAT DOMAIN 95
Paelopatides17541WD40 REPEAT DOMAIN 95
Paelopatides17542CLUSTERIN ASSOCIATED PROTEIN 1
Paelopatides17543ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17544CLUSTERIN ASSOCIATED PROTEIN 1
Paelopatides17545TESTIS-EXPRESSED PROTEIN 47
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