About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18534-
Paelopatides18535-
Paelopatides18536-
Paelopatides18537-
Paelopatides18538PROTEIN CBG26694
Paelopatides18539ENDONUCLEASE-RELATED
Paelopatides18540RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1
Paelopatides18541REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18542CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18543-
Paelopatides18544RIKEN CDNA 6820408C15
Paelopatides18545-
Paelopatides18546CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18547CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18548L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides18549EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Paelopatides18550CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18551TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides18552D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE
Paelopatides18553SMARCE1 REGULATOR OF CHROMATIN
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