About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19347COMPLEMENT FACTOR H-RELATED
Paelopatides19348-
Paelopatides19349-
Paelopatides19350REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19351TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides19352FRIZZLED
Paelopatides19353-
Paelopatides19354PROTEIN CBG26694
Paelopatides19355FRIZZLED
Paelopatides19356-
Paelopatides19357DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides19358REVERSE TRANSCRIPTASES
Paelopatides19359MICROTUBULE-ASSOCIATED PROTEIN
Paelopatides19360MICROTUBULE-ASSOCIATED PROTEIN
Paelopatides19361TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11
Paelopatides19362HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides19363HL01030P-RELATED
Paelopatides19364KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Paelopatides19365ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19366DUF3504 DOMAIN-CONTAINING PROTEIN
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