About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19473HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides19474HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides19475REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19476-
Paelopatides19477ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19478SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides19479-
Paelopatides19480-
Paelopatides19481SAND PROTEIN-RELATED
Paelopatides19482LP04239P
Paelopatides19483LP04239P
Paelopatides19484-
Paelopatides19485LP04239P
Paelopatides19486SAND PROTEIN-RELATED
Paelopatides19487ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19488-
Paelopatides19489-
Paelopatides19490-
Paelopatides19491-
Paelopatides19495RWD DOMAIN-CONTAINING PROTEIN 3
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