About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19853FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19854ASHWIN
Paelopatides19855COPINE
Paelopatides19856PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides19861RETICULOCALBIN
Paelopatides19862PLACENTAL PROTEIN 11-RELATED
Paelopatides19863-
Paelopatides19864NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides19865-
Paelopatides19866-
Paelopatides19867SIDESTEP PROTEIN
Paelopatides19868-
Paelopatides19869GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN PFC0235W
Paelopatides19870EXPORTIN-6
Paelopatides19871BCL2 INTERACTING MEDIATOR OF CELL DEATH
Paelopatides19872BCL2 INTERACTING MEDIATOR OF CELL DEATH
Paelopatides19873PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides19874-
Paelopatides19875L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides19876-
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