About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19813-
Paelopatides19814-
Paelopatides19815OLIGOPHRENIN 1
Paelopatides19816UNCHARACTERIZED
Paelopatides19817MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23
Paelopatides19818FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19819-
Paelopatides19820-
Paelopatides19821ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19822PROTEIN CBG26694
Paelopatides19823CDK5 AND ABL1 ENZYME SUBSTRATE 1
Paelopatides19824-
Paelopatides19825ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides19826SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
Paelopatides19827XRP2 PROTEIN
Paelopatides19828UNCHARACTERIZED
Paelopatides19829BONUS, ISOFORM C-RELATED
Paelopatides19830RETROTRANSPOSON
Paelopatides19831REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19832MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
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