About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19833ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19834PROTEIN CBG26694
Paelopatides19835-
Paelopatides19836-
Paelopatides19837-
Paelopatides19838GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
Paelopatides19839RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides19840REVERSE TRANSCRIPTASES
Paelopatides19841FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19842ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides19843-
Paelopatides19844UREASE ACCESSORY PROTEIN G
Paelopatides19845PROTEIN CBG26694
Paelopatides19846ENDONUCLEASE-RELATED
Paelopatides19847ENDONUCLEASE-RELATED
Paelopatides19848-
Paelopatides19849RETROTRANSPOSON
Paelopatides19850PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides19851PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides19852-
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