About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20030-
Paelopatides20031SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20032UNCONVENTIONAL MYOSIN-XVI
Paelopatides20033ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides20034LEUCINE DEHYDROGENASE
Paelopatides20035-
Paelopatides20036-
Paelopatides20037-
Paelopatides20038-
Paelopatides20039F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides20040APOLIPOPROTEIN
Paelopatides20041-
Paelopatides20042CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20043-
Paelopatides20044-
Paelopatides20045ENDONUCLEASE-RELATED
Paelopatides20046HYR DOMAIN-CONTAINING PROTEIN
Paelopatides20047CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20048-
Paelopatides20049ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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