About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20070PARAOXONASE
Paelopatides20071PARAOXONASE
Paelopatides200725'-NUCLEOTIDASE DOMAIN-CONTAINING
Paelopatides20073DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides20074WSCD FAMILY MEMBER CG9164
Paelopatides20075ACETYLCHOLINESTERASE
Paelopatides20076REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20077PROTEIN CBG26694
Paelopatides20078ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20079INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides20080PROTEIN CBG26694
Paelopatides20081REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20082REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20083REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20084-
Paelopatides20085-
Paelopatides20086SCAVENGER RECEPTOR CLASS F
Paelopatides20087-
Paelopatides20088TYROSINE-PROTEIN KINASE
Paelopatides20089LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
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