About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19946POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides19947MICROSOMAL PROSTAGLANDIN E SYNTHASE-2
Paelopatides19948COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides19949CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19950WSCD FAMILY MEMBER CG9164
Paelopatides19951ACYL-COA DEHYDROGENASE
Paelopatides19952TRANSPOSON
Paelopatides19953PROTEIN CBG26694
Paelopatides19954-
Paelopatides19955CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19956ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19957-
Paelopatides19958REVERSE TRANSCRIPTASES
Paelopatides19959UNCHARACTERIZED
Paelopatides19960PKSB
Paelopatides19961SODIUM-BILE ACID COTRANSPORTER
Paelopatides19962HSC70CB, ISOFORM G-RELATED
Paelopatides19963SH3-BINDING
Paelopatides19964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19965SH3-BINDING
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