About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20050GUANYLATE BINDING PROTEIN
Paelopatides20051UNCHARACTERIZED
Paelopatides20052-
Paelopatides20053MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
Paelopatides20054REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20055EXODEOXYRIBONUCLEASE III
Paelopatides20056ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides20057REVERSE TRANSCRIPTASES
Paelopatides20058POL PROTEIN
Paelopatides20059-
Paelopatides20060ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides20061BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A
Paelopatides20062PROTEIN CBG26694
Paelopatides20063-
Paelopatides20064ADHESIN, PUTATIVE-RELATED
Paelopatides20065PROTEIN CBG26694
Paelopatides20066ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides20067-
Paelopatides20068-
Paelopatides20069PARAOXONASE
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