About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19922-
Paelopatides19924-
Paelopatides19925POL PROTEIN
Paelopatides19926HOMEOBOX PROTEIN HMX
Paelopatides19927-
Paelopatides19928SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
Paelopatides19929POL PROTEIN
Paelopatides19932ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides19933HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides19934REVERSE TRANSCRIPTASE
Paelopatides19935PROTEIN CBG26694
Paelopatides19936TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides19937-
Paelopatides19939-
Paelopatides19940OPSIN
Paelopatides199415'-NUCLEOTIDASE-RELATED
Paelopatides1994252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides19943RIBOSOMAL PROTEIN S15P/S13E
Paelopatides19944POL PROTEIN
Paelopatides19945-
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